Franck Carbonero, PhD

Higbee J, Brownmiller C, Solverson P, Howard L and Carbonero F* (2023). Polyphenolic profiles of a variety of wild berries from the Pacific Northwest region of North America. Current Research in Food Science, 7, 100564

Jamieson P, Carbonero F and Stevens JF (2023). Dietary (poly) phenols mitigate inflammatory bowel disease: Therapeutic targets, mechanisms of action, and clinical observations. Current Research in Food Science, 6, 100521

Rust BM, Riordan JO, Carbonero F and Solverson P (2023). One-week elderberry juice treatment increases carbohydrate oxidation after a meal tolerance test and is well tolerated in adults: a randomized controlled pilot study. Nutrients 15(9), 2072

Higbee J, Solverson P, Zhu M and Carbonero F* (2022).The emerging roles of dark berries polyphenols in human health and nutrition. Food Frontiers, 3 (1), 3-27

Kellogg JA, Klarquist EF, Waziri AD, Luftig D, Carbonero F, Solverson P, Perrigue M, Aytekin D, Walton J, Garland-Campbell K, Murphy KM (2022). Developing a definition of biofortification through the synthesis of food biofortification publications: a scoping review protocol. JBI Evidence Synthesis, 20 (8) 2109-2116

Lavefve L, Cureau N, Rodhouse L, Vallee M, Walker LM, Marasini D, and Carbonero F* (2021). Microbiota profiles and dynamics in different alcoholic and non-alcoholic fermented food products. Food Frontiers, 2 (3), 268-281

Al Othaim A, Marasini D, Carbonero F* (2021). Impact of cranberry juice consumption on the gut and vaginal microbiota in post-menopausal women. Food Frontiers, 2 (3), 282-293

Cureau N, Lavefve L, Marasini D, Threlfall R, Howard LR, and Carbonero F* (2021). Fungal diversity and dynamics during grape wine fermentations with different sulfite levels and yeast inoculations. American Journal of Enology and Viticulture, 2 (3), 240-256 (IF: 2.6)

Cureau N, Threlfall R, Savin M, Marasini D, Lavefve L, and Carbonero F* (2021). Year, location, and variety impact on grape-, soil-, and leaf-associated fungal microbiota of Arkansas-grown table grapes. Microbial Ecology 82 (1), 73-86 (IF: 4.2)

Cureau N, Threlfall R, Marasini D, Lavefve L, and Carbonero F* (2021). Year, location, and variety impact on grape-associated mycobiota of Arkansas-grown wine grapes for wine production. Microbial Ecology, 82 (4), 845-858 (IF: 4.2)

Sharma JK, Sihmar M, Santal AR, Prager L, Carbonero F and Singh NP (2021) Barley melanoidins: key dietary compounds with potential health benefits. Frontiers in Nutrition 8:708194 (IF:6.6)

Gu I, Lam WS, Marasini D, Brownmiller C, Savary B, Lee JA, Carbonero F and Lee SO (2020). In vitro fecal fermentation patterns of arabinoxylan from rice bran on fecal microbiota from normal-weight and overweight/obese Subjects. Nutrients, 11(2), 217 (IF: 6.7)

AlJahdali N, Gadonna-Widehem P, Anton PM, and Carbonero F* (2020). Gut microbiota modulation by dietary barley malts melanoidins. Nutrients; 13(6), 2052 (IF: 6.7)

Lavefve L, Howard LR, and Carbonero F* (2020). Berry polyphenols metabolism and impact on human gut microbiota and health. Food and Function, 11, 45-65 (IF: 6.3)

Al Othaim A, Marasini D, and Carbonero F* (2020). Impact of increasing concentrations of tart and sweet cherries juice concentrates on the murine gut microbiota. Food Frontiers 1 (3), 224-233

Edwards JS, Hettiarachchy NS, Kumar TKS, Carbonero F, Martin EM, and Benamara M (2020). Physicochemical properties of soy protein hydrolysate and its formulation and stability with encapsulated probiotic under in vitro gastrointestinal environment. Journal of Food Science, 85 (10), 3543-355 (IF: 3.7)

Wilson SA, Mohammadi Shad Z, Oduola AA, Zhou Z, Jiang H, Carbonero F, and Atungulu GG (2020). Decontamination of Mycotoxigenic Fungi on Shelled Corn Using Selective Infrared Heating Technique. Cereal Chemistry, 98: 31– 43 (IF: 2.5).

Wagle B, Marasini D Upadhyaya I, Shrestha S, Arsi K, Donoghue A, Carbonero F, Donoghue D, Maas K, and Upadhyay A (2020). Whole Genomic sequencing of Campylobacter jejuni strains isolated from poultry. Microbiology Resource Announcements, 9 (7) e01272-19

Lavefve L, Marasini D and Carbonero F* (2019). Microbial ecology of plant-based fermented foods and current knowledge on their impact on human health. Advances in Food Science and Nutrition, 87, 147-186 (IF: 7.3)

ALJahdali N, Carbonero F* (2019). Impact of Maillard Reaction products on Nutrition and Health: Current knowledge and need to understand their fate in the human digestive system. Critical Reviews in Food Science and Nutrition; 59 (3), 474-487 (IF: 12.3)

Mayta-Apaza AC, Marasini D, Carbonero F* (2019). Tart Cherries and health: Current knowledge and need for a better understanding of the fate of phytochemicals in the human gastrointestinal tract. Critical Reviews in Food Science and Nutrition; 59 (4), 626-638 (IF: 12.3)

Rodhouse L, Carbonero F* (2019). Overview of craft brewing specificities and potentially associated microbiota. Critical Reviews in Food Science and Nutrition; 59 (3), 462-473 (IF: 12.3)

Gomez A, Sharma A, Mallott E, Petrzelkova K, Robinson CJ, Yeoman CJ, Carbonero F, Pafco B, Rothman J, Ulanov A, Vlckova K, Amato KR, Schnorr S, Dominy N, Modry D, Todd A, Torralba M, Nelson KE, Burns M, Blekhman R, Remis M, Stumpf RM, Wilson BA, Gaskins HR, Garber P, White BA, Leigh SR (2019). Plasticity in the human gut microbiome defies evolutionary constraints. mSphere 4 (4), e00271-19 (IF: 4.3)

Ashley D, Marasini D, Brownmiller C, Lee JA, Carbonero F and Lee SO (2019). Impact of grain sorghum polyphenols on microbiota of normal weight and overweight/obese subjects during in vitro fecal fermentation. Nutrients, 11(2), 217 (IF: 6.7)

Walker LM, Cedeño-Sanchez M, Herre EA, Carbonero F, Turner BL, Wright SJ, and Stephenson SL (2019). The response of litter-associated myxomycete communities to 14 years of N, P and K addition in a lowland tropical rain forest. Journal of Eukaryotic Biology, 66 (5), 757-770 (IF: 3.9)

Carbonero F*, Mayta-Apaza AC, Bolea M, Yu JZ, Lindebald M, Lyubimov A, Neri F, Szilagyi E and Bartholomew A (2019). Specific members of the gut microbiota are reliable biomarkers of irradiation intensity and lethality in large animal models of human health. Radiation Research Journal, 191 (1), 107-121 (IF: 2.5).

Carbonero F*, Mayta-Apaza AC, Yu JZ, Lindebald M, Lyubimov A, Neri F, Szilagyi E and Bartholomew A (2018). A Comparative Analysis of Gut Microbiota disturbances in the Gottingen Minipig and Rhesus Macaque Models of Acute Radiation Syndrome following bioequivalent radiation exposures. Radiation and Environmental Biophysics, 57 (4), 419-426 (IF: 1.9).

Mayta-Apaza AC, Pottgen E, De Bodt J, Papp N, Abranko L, Van de Wiele T, Lee SO and Carbonero F* (2018). Impact of tart cherries polyphenols on the human gut microbiota and phenolic metabolites in vitro and in vivo. Journal of Nutritional Biochemistry, 59, 160-172 (IF: 6.1)

Tsai T, Sales MA, Kim H, Erf GF, Vo N, Carbonero F, Van Der Merwe M, Kegley EA, Buddington RK, Wang X, Maxwell CV, and Zhao J (2018). Isolated rearing at lactation increases gut microbial diversity and improves post-weaning performance in pigs. Frontiers in Microbiology, 9: 2889 (IF: 6).

ALJahdali N, Gadonna-Widehem P, Delayre-Orthez C, Marier D, Garnier B, Carbonero F*, Anton PM (2017). Repeated Oral Exposure to N ε-Carboxymethyllysine, a Maillard Reaction Product, Alleviates Gut Microbiota Dysbiosis in Colitic Mice. Digestive Diseases and Science.; 62 (12), 3370-3384 (IF: 3.5)

Vo N, Tsai TC, Maxwell C, Carbonero F* (2017). Early exposure to agricultural soil accelerates the maturation of the early-life pig gut microbiota. Anaerobe; 45:31-39 (IF: 3.3)

Walden C, Carbonero F*, Zhang W (2017). Assessing impacts of DNA extraction methods on next generation sequencing of water and wastewater samples. Journal of Microbiological Methods; 141:10-16 (IF: 2.6)

Johnson WH, Douglas MR, Lewis JA, Stuecker TN, Carbonero F, Austin BJ, Evans-White MA, Entrekin SA, Douglas ME (2017). Do biofilm communities respond to the chemical signatures of fracking? A test involving streams in North-central Arkansas. BMC Microbiology; 17(1):29 (IF: 3.6)

Turroni S, Rampelli S, Biagi E, Consolandi C, Severgnini M, Peano C, Quercia S, Soverini M, Carbonero F, Bianconi G, Rettberg P, Canganella F, Brigidi P, Candela M (2017). Temporal dynamics of the gut microbiota in people sharing a confined environment, a 520-day ground-based space simulation, MARS500. Microbiome; 5(1):39 (IF: 14.6)

Carbonero F* (2017). Human epigenetics and microbiome: the potential for a revolution in both research areas by integrative studies. Future Science OA; 3(3). (IF: 2.6)

Sheflin AM, Melby CM, Carbonero F and Weir TL (2017). Linking Dietary Patterns with Gut Microbial Composition and Function. Gut Microbes; 8(2):113-129 (IF: 10.2)

Cureau N, AlJahdali N, Vo N, Carbonero F* (2016). Epigenetic mechanisms in microbial members of the human microbiota: current knowledge and perspectives. Epigenomics; 8(9): 1259-73 (IF: 4.8).

Gomez A, Ptrzelkova K, Yeoman C, Burns MB, Amato KR, Vlckova K, Modry D, Todd A, Robbinson CA, Remis M, Torralba M, Nelson KE, Carbonero F, Gaskins HR, Wilson B, Stumpf R, White B, Leigh S and Blekhman R (2016). Gut microbiome of coexisting BaAka pygmies and Bantu reflects gradients of traditional subsistence patterns. Cell Reports; 4(9):2142-53 (IF: 10).

Baker CA, Rubinelli PM, Park SH, Carbonero F, Ricke SC (2016). Shiga toxin-producing Escherichia coli in food: Incidence, ecology, and detection strategies. Food Control; 59:407-419 (IF: 5.6).

Walden, C, Carbonero, F, and Zhang, W (2015). Preliminary Assessment of Bacterial Community Change Impacted by Chlorine Dioxide in a Water Treatment Plant. Journal of Environmental Engineering; 42(2) (IF: 1.7).

Gomez A, Petrzelkova K, Yeoman CJ, Vlckova K, Mrázek J, Koppova I, Carbonero F, Ulanov A, Modry D, Todd A, Torralba M, Nelson KE, Gaskins HR, Wilson B, Stumpf RM, White BA, Leigh SR (2015). Gut microbiome composition and metabolomic profiles of wild western lowland gorillas (Gorilla gorilla gorilla) reflect host ecology. Molecular Ecology; 10:2551-65 (IF: 6.6).

O’Keefe SJD, Li JV, Lahti L, Ou J, Carbonero F, Mohammed K, Posma JM, Kinross J, Wahl E, Rude E, Vipperla K, Naidoo VD, Mtshali L, Tims S, Puylaert PGB, DeLany J, Krasinskas A, Benefiel AC, Kaseb HO, Newton K, de Vos WM, Gaskins HR, Zoetendal EG, Nicholson JK (2015). Fat, Fiber and Cancer Risk in African Americans and Rural Africans. Nature Communications; 6:6342 (IF: 17.7).

Shen W, Wolf PG, Carbonero F, Zhong W, Reid T, Gaskins HR, McIntosh MK (2014). Intestinal and systemic inflammatory responses are positively associated with sulfidogenic bacteria abundance in high-fat-fed male C57BL/6J mice. Journal of Nutrition; 144(8):1181-7 (IF: 4.8)

Carbonero F, Oakley BB and Purdy KJ (2013). Metabolic flexibility as a major predictor of spatial distribution in microbial communities. PLoS One; 9(1):e85105 (IF: 3.2).

Candela M, Turroni S, Biagi E, Carbonero F, Rampelli S, Fiorentini, and Brigidi P (2014). Inflammation and colorectal cancer, when microbiota-host mutualism breaks. World Journal of Gastroenterology; 20(4):908-22 (IF:5.6).

Ou J, Carbonero F⁺, Zoetendal E, Umeakunne K, DeLany J, Wang M, Newton K, Gaskins HR, and O’Keefe SJD (2013). Diet, microbiota, and microbial metabolites in colon cancer risk in rural Africans and African Americans. American Journal of Clinical Nutrition; 98(1): 111-120 (IF: 8.5).

Amato KR, Yeoman CJ, Kent A, Righini N, Carbonero F, Estrada A, Gaskins HR, Stumpf RM, Yildirim S, Torralba M, Gillis M, Wilson BA, Nelson KE, White BA and Leigh SR (2013). Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes. The ISME Journal; 7 (7), 1344-1353 (IF: 11.2).

Hayot Carbonero C, Carbonero F, Smith LMJ and Brown TA (2013). Cytological characterisation of the underutilized forage crop Onobrychis viciifolia Scop. and other members of the Onobrychis genus. Genetic Resources and Crop Evolution; 60 (7), 1987-1996 (IF: 1.5).

Nava G. M., Carbonero F⁺, Croix JA, Greenberg E and Gaskins HR (2012). Abundance and diversity of mucosa-associated hydrogenotrophic microbes in the healthy human colon. The ISME Journal. 6(1):57-70 (IF: 11.2).

Carbonero F, Benefiel AC and Gaskins HR (2012). Contributions of the hydrogen economy to colonic homeostasis. Nature Reviews Gastroenterology and Hepatology. 9:504-518 (IF: 73).

Nava GM, Carbonero F⁺, Ou J, Benefiel AC, O’Keefe SJD and Gaskins HR (2012). Hydrogenotrophic microbiota distinguish native Africans from African and European Americans. Environmental Microbiology Reports. 4(3):307–315 (IF: 3.5).

Carbonero F, Benefiel AC, Alizadeh A and Gaskins HR (2012). Microbial sulfur metabolisms in the human colon and their link with health and disease. Frontiers in gastrointestinal sciences. 3:448 (IF: 4.8)

Carbonero F, Oakley BB, Hawkins RJ and Purdy KJ (2012). Genotypic distribution of Methanosaeta, a specialist model microorganism, along an estuary: Does metabolic restriction limit niche differentiation potential? Microbial Ecology. 63(4): 856-864 (IF: 4.5).

Oakley BB, Carbonero F, Dowd SE, Hawkins RJ and Purdy KJ (2012). Contrasting patterns of niche partitioning between two anaerobic terminal oxidizers of organic matter. The ISME Journal. 6:905–914 (IF: 11.2).

Hayot Carbonero C, Carbonero F, Smith LMJ and Brown TA (2012). Phylogenetic characterisation of Onobrychis species with special focus on the forage crop Onobrychis viciifolia. Genetic Resources and Crop Evolution; 59 (8), 1777-1788 (IF: 1.5).

Carbonero F, Nava GM, Benefiel AC, Greenberg E and Gaskins HR (2011). Microbial DNA extraction from intestinal biopsies is improved by avoiding mechanical cell disruption. Journal of Microbiological Methods. 87:125-127 (IF: 2.6).

Croix JA, Carbonero F, Nava GM, Russel M, Benefiel AC, Greenberg E and Gaskins HR (2011). On the relationship between sialomucin and sulfomucin expression and hydrogenotrophic microbes in the human colonic mucosa. PLOS One. I6:e24447 (IF: 3.2).

Carbonero F, Oakley BB and Purdy KJ. (2010) Improving the isolation of anaerobes on solid media: The example of the fastidious Methanosaeta. Journal of Microbiological Methods; 80(2):203-205 (IF:2.6).

Oakley BB, Carbonero F, van der Gast CJ, Hawkins RJ and Purdy KJ (2010). Evolutionary divergence and biogeography of sympatric niche-differentiated bacterial populations. The ISME Journal; 4(4):488–497 (IF: 11.2).